Jmol 12.2 RC 6
Jmol is an applet and Java based application designed to display various 3D chemical information.
Jmol’s features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs
· The JmolApplet is a web browser applet that can be integrated into web pages. It is ideal for development of web-based courseware and web-accessible chemical databases. The JmolApplet provides an upgrade path for users of the Chime plug-in.
· The Jmol application is a standalone Java application that runs on the desktop.
· The JmolViewer can be integrated as a component into other Java applications.
· Translated into multiple languages: Catalan (ca), Chinese (both zh_CN and zh_TW) Czech (cs), Dutch (nl), French (fr), German (de), Hungarian (hu), Italian (it), Korean (ko), Portuguese – Brazil (pt_BR), Spanish (es), Turkish (tr), (in addition to the native American English, en-US, and British English, en-GB).
· Automatically adopts the language of the user’s operating system, if it is among the translations available. You can change to another language if desired.
· Supports all major web browsers: Internet Explorer, Mozilla and Firefox, Safari, Google Chrome, Opera, Konqueror, IceWeasel
· High-performance 3D rendering with no hardware requirements
· Support for unit cell and symmetry operations
· Schematic shapes for secondary structures in biomolecules
· Java Runtime Environment
· bug fix: load PACKED SUPERCELL produces redundant atoms
· new feature: transparent background PNG images with WRITE PNGT xxxx.png
· — set ANTIALIASEIMAGES false to avoid slight trim issue
· — use an unusual color, such as [x010101] for the background # new feature: preliminary CASTEP .phonon frequency file reader # — preliminary only
· — reads q=0 and q#0 points
· — use load … SUPERCELL to select out a specific q-point
· — for example: load c60.phonon {1 1 1} SUPERCELL {2 1 2}
· will select for q = (0.5 0 0.5) # load c60.phonon -5 {1 1 1} SUPERCELL {2 1 2}
· and only mode 5 for q = (0.5 0 0.5)
· load c60.phonon -5 {2 2 2} SUPERCELL {-4 1 2}
· eight supercells; mode 5 only for q=(-0.25 0 0.5)
· new feature: unitcell {xxx yyy z} where z is negative fills entire (standard) xxx yyy space with unit cells of size z
· bug fix: AtomSetChooser set up too late — can override embedded jmolScript vibration/vector scale commands
· bug fix: set naviationPeriodic while navigating should disallow unit ce…